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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87702.1PFAM: HopJ type III effector protein. (112 aa)    
Predicted Functional Partners:
AGA87701.1
PFAM: Protein of unknown function (DUF1244).
     0.934
AGA87700.1
FolB domain protein; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain.
       0.605
AGA87850.1
Hypothetical protein.
  
     0.576
AGA87699.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
       0.573
cysZ
Uncharacterized protein involved in cysteine biosynthesis; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.
       0.493
AGA87698.1
Hypothetical protein.
       0.466
AGA86502.1
PFAM: Glutaredoxin-like domain (DUF836).
  
     0.461
AGA87493.1
Hypothetical protein; PFAM: YcgL domain.
  
     0.436
AGA86466.1
PFAM: Protein of unknown function (DUF2797).
  
     0.422
AGA87073.1
1-aminocyclopropane-1-carboxylate deaminase; Manually curated.
  
     0.417
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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