STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87727.1PFAM: Protein of unknown function (DUF1329). (453 aa)    
Predicted Functional Partners:
AGA85686.1
PFAM: Protein of unknown function (DUF1302).
 
    0.955
AGA86468.1
Putative photosystem II stability/assembly factor-like protein; PFAM: BNR/Asp-box repeat.
 
  
 0.882
AGA86469.1
Putative RND superfamily exporter; PFAM: Patched family; MMPL family.
 
  
 0.812
AGA86105.1
Hypothetical protein.
    
 
 0.681
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.668
AGA85278.1
PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; LysM domain.
    
   0.520
AGA87010.1
Putative membrane protein; PFAM: Protein of unknown function, DUF599.
  
     0.452
AGA86299.1
PFAM: Protein of unknown function (DUF2802).
  
     0.400
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.