STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87741.1PFAM: SmpA / OmlA family. (113 aa)    
Predicted Functional Partners:
AGA88484.1
PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily.
   
  
 0.877
AGA86500.1
PFAM: Bacterial protein of unknown function (DUF883).
   
    0.838
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.782
AGA88150.1
PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain.
   
    0.776
AGA86105.1
Hypothetical protein.
   
    0.762
AGA84644.1
PFAM: Bacterial protein of unknown function (DUF883).
   
  
 0.752
AGA87744.1
Bacterioferritin (cytochrome b1); PFAM: Ferritin-like domain.
  
    0.732
AGA86069.1
PFAM: NlpB/DapX lipoprotein.
   
 
 0.728
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.726
AGA84688.1
PFAM: Protein of unknown function (DUF1458).
   
    0.720
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.