STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGA87793.1Putative membrane protein; PFAM: Phosphate-starvation-inducible E; Belongs to the PsiE family. (163 aa)    
Predicted Functional Partners:
AGA87795.1
ABC-type transport system involved in resistance to organic solvents, auxiliary component; PFAM: Toluene tolerance, Ttg2.
       0.788
AGA87794.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
     0.787
AGA87796.1
ABC-type transport system involved in resistance to organic solvents, periplasmic component; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
       0.777
AGA87797.1
PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
       0.759
AGA87798.1
ABC-type transport system involved in resistance to organic solvents, ATPase component; PFAM: ABC transporter.
       0.759
AGA87792.1
Putative transcriptional regulator, BolA superfamily; PFAM: BolA-like protein; Belongs to the BolA/IbaG family.
 
     0.650
AGA84648.1
Hypothetical protein.
      
 0.578
AGA86630.1
PFAM: Domain of unknown function (DUF1883).
  
     0.542
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
 
    0.526
AGA85063.1
PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
  
     0.514
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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