STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87809.1Microcin-processing peptidase 1; PFAM: Putative modulator of DNA gyrase. (448 aa)    
Predicted Functional Partners:
AGA87811.1
Microcin-processing peptidase 2; PFAM: Putative modulator of DNA gyrase.
 
 
0.974
AGA87810.1
PFAM: Protein of unknown function (DUF615); Belongs to the UPF0307 family.
  
    0.729
AGA86232.1
ClpP class periplasmic serine protease; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.
      
 0.476
AGA87578.1
Putative secreted protein; PFAM: Chagasin family peptidase inhibitor I42.
  
   
 0.430
AGA84634.1
16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
   
  
 0.416
AGA87535.1
Hypothetical protein; PFAM: SprT-like family; Belongs to the SprT family.
  
   
 0.406
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.