Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA87830.1Putative periplasmic/secreted protein; PFAM: Protein of unknown function (DUF541). (234 aa)    
Predicted Functional Partners:
AGA84995.1
PFAM: outer membrane porin, OprD family.
  
     0.640
AGA86042.1
PFAM: outer membrane porin, OprD family.
  
     0.639
AGA84816.1
PFAM: outer membrane porin, OprD family.
  
     0.638
AGA86133.1
PFAM: outer membrane porin, OprD family.
  
     0.637
AGA85654.1
PFAM: outer membrane porin, OprD family.
  
     0.634
AGA86501.1
PFAM: outer membrane porin, OprD family.
  
     0.629
AGA85634.1
PFAM: outer membrane porin, OprD family.
  
     0.620
AGA87829.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
       0.611
AGA85213.1
PFAM: outer membrane porin, OprD family.
  
     0.597
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.580
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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