Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA87833.1PFAM: Predicted periplasmic protein (DUF2271). (169 aa)    
Predicted Functional Partners:
AGA87832.1
Hypothetical protein; PFAM: PepSY-associated TM helix.
   
 0.994
AGA87834.1
ABC-type Co2+ transport system, periplasmic component; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
 0.991
AGA87835.1
Sulfite reductase, alpha subunit (flavoprotein); PFAM: Flavodoxin; Oxidoreductase NAD-binding domain; manually curated; non-canonical start codon.
 
     0.886
AGA86211.1
Membrane-associated lipoprotein involved in thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.815
AGA87831.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   
 0.784
AGA85723.1
Putative iron-regulated protein; PFAM: Imelysin.
   
    0.707
AGA85722.1
Putative thiol oxidoreductase; PFAM: Protein of unknown function (DUF1111).
   
    0.672
AGA87572.1
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
   
 0.474
AGA84993.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
  
 0.458
AGA86939.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent receptor.
 
     0.437
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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