STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA87834.1ABC-type Co2+ transport system, periplasmic component; PFAM: Nickel uptake substrate-specific transmembrane region. (291 aa)    
Predicted Functional Partners:
AGA87833.1
PFAM: Predicted periplasmic protein (DUF2271).
 
  
 0.991
AGA87832.1
Hypothetical protein; PFAM: PepSY-associated TM helix.
 
   
 0.971
AGA87835.1
Sulfite reductase, alpha subunit (flavoprotein); PFAM: Flavodoxin; Oxidoreductase NAD-binding domain; manually curated; non-canonical start codon.
 
     0.902
AGA87831.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.793
AGA85723.1
Putative iron-regulated protein; PFAM: Imelysin.
   
    0.779
AGA84790.1
ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
   
    0.769
AGA86211.1
Membrane-associated lipoprotein involved in thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.723
AGA85722.1
Putative thiol oxidoreductase; PFAM: Protein of unknown function (DUF1111).
   
    0.514
AGA84993.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
    0.505
AGA86939.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent receptor.
 
     0.498
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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