STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87849.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
AGA87850.1
Hypothetical protein.
 
    
0.798
AGA85095.1
Putative membrane protein affecting hemolysin expression; PFAM: HAMP domain; Bacterial virulence factor haemolysin.
  
     0.769
cmoM
Methyltransferase family protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
       0.767
AGA87847.1
Putative pyrophosphatase; PFAM: MazG nucleotide pyrophosphohydrolase domain.
       0.766
AGA87196.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2059).
  
     0.740
AGA86076.1
PFAM: Sel1 repeat.
  
    0.738
AGA87480.1
PFAM: Arc-like DNA binding domain.
  
     0.723
AGA85624.1
Hypothetical protein.
  
     0.721
AGA86506.1
PFAM: Peptidase inhibitor I78 family.
  
     0.694
AGA86630.1
PFAM: Domain of unknown function (DUF1883).
  
     0.690
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.