Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87853.1Hypothetical protein. (97 aa)    
Predicted Functional Partners:
AGA87383.1
Putative deacetylase; PFAM: Uncharacterized protein conserved in bacteria (DUF2334).
  
    0.752
AGA87382.1
PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
     0.748
AGA84956.1
PFAM: Protein of unknown function (DUF785).
   
    0.745
AGA87674.1
Hypothetical protein.
  
     0.726
AGA87854.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
       0.706
AGA85692.1
PFAM: Protein of unknown function (DUF721).
  
     0.705
AGA87384.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
    0.692
AGA85794.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2131).
  
     0.688
AGA85701.1
Hypothetical protein.
  
     0.676
AGA87932.1
PFAM: Acyltransferase family.
  
    0.653
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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