STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA87901.1Transposase; PFAM: Integrase core domain. (281 aa)    
Predicted Functional Partners:
AGA87902.1
PFAM: Transposase.
 
  
 0.947
AGA85035.1
PFAM: Transposase.
 
  
 0.835
AGA87651.1
Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain.
 
   
 0.494
AGA88513.1
Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain.
 
   
 0.469
AGA85972.1
PFAM: Transposase DDE domain; Transposase domain (DUF772).
 
    0.442
AGA87917.1
PFAM: Transposase DDE domain; Transposase domain (DUF772).
 
    0.442
AGA87903.1
Hypothetical protein.
       0.408
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.