Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA87960.1PFAM: Thermostable hemolysin. (229 aa)    
Predicted Functional Partners:
AGA87961.1
AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme.
 
   
 0.977
AGA87962.1
Hypothetical protein.
 
   
 0.974
AGA87963.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.974
AGA87964.1
Hypothetical protein.
 
   
 0.961
AGA87966.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
     0.764
AGA87965.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
 
     0.683
AGA87952.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
 
     0.677
AGA87959.1
PFAM: Protein of unknown function (DUF1232).
 
     0.545
AGA87958.1
Hypothetical protein; PFAM: SdiA-regulated.
 
     0.541
AGA87967.1
PFAM: Cytochrome b(N-terminal)/b6/petB.
       0.480
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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