STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA87986.1PFAM: Putative neutral zinc metallopeptidase. (285 aa)    
Predicted Functional Partners:
AGA88537.1
Putative membrane protein; PFAM: Transglycosylase associated protein.
  
  
 0.647
AGA87985.1
Putative metal-binding protein; PFAM: Protein of unknown function, DUF.
       0.561
AGA87983.1
Hypothetical protein.
       0.545
AGA87671.1
Putative ATPase; PFAM: Bacterial protein of unknown function (DUF853).
 
     0.538
AGA84692.1
Hypothetical protein.
      
 0.482
AGA85809.1
Putative outer membrane lipoprotein; PFAM: Rickettsia 17 kDa surface antigen.
      
 0.481
AGA86424.1
PFAM: Protein of unknown function (DUF808).
 
     0.466
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.