STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88015.1PFAM: Short chain fatty acid transporter; TIGRFAM: TIGR00366 family protein. (444 aa)    
Predicted Functional Partners:
AGA88009.1
PFAM: Short chain fatty acid transporter; TIGRFAM: TIGR00366 family protein.
  
  
 
0.907
AGA88010.1
H+/gluconate symporter family protein; PFAM: Citrate transporter.
 
  
 0.600
AGA85643.1
PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit.
 
  
 0.598
AGA88369.1
PFAM: Carbon starvation protein CstA.
  
     0.534
AGA85644.1
PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit.
 
  
 0.483
AGA88014.1
PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain.
       0.458
AGA88370.1
Hypothetical protein.
  
     0.429
AGA88016.1
PFAM: RNA pseudouridylate synthase.
       0.419
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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