Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88021.1PFAM: Peptidase propeptide and YPEB domain. (101 aa)    
Predicted Functional Partners:
AGA88020.1
PFAM: Peptidase propeptide and YPEB domain.
 
   
0.979
AGA88023.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
 0.958
AGA88022.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
 
    0.906
AGA88690.1
PFAM: Protein of unknown function (DUF2782).
  
    0.820
AGA88345.1
Hypothetical protein; PFAM: SdiA-regulated.
 
    0.513
AGA87795.1
ABC-type transport system involved in resistance to organic solvents, auxiliary component; PFAM: Toluene tolerance, Ttg2.
  
   0.511
AGA88019.1
PFAM: Copper binding periplasmic protein CusF.
       0.509
AGA88359.1
PFAM: PhoQ Sensor; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
  
 0.503
AGA88358.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
  
    0.488
AGA85080.1
Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase.
 
     0.482
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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