Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA88054.1Hypothetical protein. (363 aa)    
Predicted Functional Partners:
AGA88059.1
PFAM: Protein of unknown function (DUF3450).
 
     0.966
AGA88058.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
     0.965
AGA88056.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
     0.960
AGA88057.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
     0.959
AGA88055.1
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
     0.948
AGA86935.1
Periplasmic protein TonB, links inner and outer membranes; PFAM: Gram-negative bacterial tonB protein.
 
     0.702
AGA88222.1
Putative enzyme of heme biosynthesis; PFAM: HemX.
 
  
 0.702
AGA88060.1
Outer membrane protein W; PFAM: OmpW family.
       0.696
AGA86352.1
PFAM: Chain length determinant protein.
  
     0.544
AGA86353.1
PFAM: Chain length determinant protein.
  
     0.482
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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