Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA88351.1Putative permease; PFAM: Domain of unknown function DUF20. (357 aa)    
Predicted Functional Partners:
AGA88352.1
Putative membrane protein; PFAM: OPT oligopeptide transporter protein.
       0.576
AGA88350.1
Hypothetical protein.
       0.508
AGA88353.1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family.
 
    0.461
AGA85001.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase.
  
     0.458
AGA84656.1
Putative membrane protein; PFAM: Protein of unknown function (DUF421).
  
     0.433
AGA87385.1
Putative membrane protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN).
 
    0.409
AGA87410.1
PFAM: Protein of unknown function (DUF3618).
 
     0.402
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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