STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88355.1Hypothetical protein. (293 aa)    
Predicted Functional Partners:
AGA88354.1
PFAM: Curlin associated repeat.
 
   
 0.931
AGA85997.1
Uncharacterized protein involved in formation of curli polymers; PFAM: Curli production assembly/transport component CsgG.
 
  
 0.820
AGA85998.1
PFAM: Curli production assembly/transport component CsgF.
 
  
 0.818
AGA85996.1
PFAM: Curlin associated repeat.
 
   
 0.789
AGA85999.1
PFAM: Curli assembly protein CsgE.
 
  
 0.763
AGA88356.1
Hypothetical protein.
       0.656
AGA85620.1
Hypothetical protein.
  
     0.505
AGA85619.1
Uncharacterized protein involved in chromosome partitioning.
  
     0.498
AGA85618.1
Hypothetical protein.
  
     0.488
AGA88359.1
PFAM: PhoQ Sensor; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
     0.463
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.