STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88478.1Hypothetical protein; PFAM: CYTH domain. (454 aa)    
Predicted Functional Partners:
AGA85076.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
  
     0.730
AGA88477.1
TIGR00153 family protein; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein.
       0.721
AGA88479.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
       0.708
AGA88476.1
Phosphate/sulfate permease; PFAM: Phosphate transporter family.
       0.674
AGA85786.1
PFAM: 37-kD nucleoid-associated bacterial protein.
  
     0.664
AGA86166.1
Hypothetical protein.
  
     0.664
AGA87457.1
Hypothetical protein.
  
     0.649
AGA87338.1
PFAM: Outer membrane protein (OmpH-like).
  
 
   0.610
AGA86257.1
Hypothetical protein.
  
     0.609
AGA86991.1
Phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA.
 
     0.599
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.