STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88503.1ABC-type uncharacterized transport system, permease component; PFAM: High-affinity nickel-transport protein. (373 aa)    
Predicted Functional Partners:
AGA88504.1
Hypothetical protein; PFAM: Uncharacterised BCR, COG1937.
 
   
 0.861
AGA88501.1
PFAM: TraX protein.
       0.797
AGA88502.1
Putative membrane protein; PFAM: SNARE associated Golgi protein.
       0.795
AGA88500.1
Hypothetical protein.
       0.528
AGA85518.1
Hypothetical protein; PFAM: Uncharacterised BCR, COG1937.
 
   
 0.415
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.