STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88569.1TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (367 aa)    
Predicted Functional Partners:
AGA85638.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.812
AGA88487.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.812
AGA85639.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.809
AGA88486.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.809
AGA88568.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II.
       0.652
AGA88570.1
Hypothetical protein; PFAM: Tim44-like domain.
       0.517
AGA85640.1
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.474
AGA86658.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
    0.407
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.