STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88570.1Hypothetical protein; PFAM: Tim44-like domain. (280 aa)    
Predicted Functional Partners:
AGA86894.1
FtsH-interacting integral membrane protein; PFAM: Uncharacterised protein family UPF0005; Belongs to the BI1 family.
   
  
 0.662
htpX
Heat shock protein; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.
   
  
 0.648
AGA88568.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II.
       0.616
AGA88469.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
   
  
 0.604
AGA86348.1
PFAM: Spermine/spermidine synthase.
  
     0.538
AGA87810.1
PFAM: Protein of unknown function (DUF615); Belongs to the UPF0307 family.
  
     0.529
AGA88569.1
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.517
AGA88468.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
   
  
 0.510
AGA87849.1
Hypothetical protein.
  
     0.497
AGA87383.1
Putative deacetylase; PFAM: Uncharacterized protein conserved in bacteria (DUF2334).
  
     0.453
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.