Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA88591.1PFAM: Zonular occludens toxin (Zot). (394 aa)    
Predicted Functional Partners:
AGA88589.1
Hypothetical protein.
     
 0.778
AGA88590.1
PFAM: Protein of unknown function (DUF2523).
       0.773
AGA88593.1
Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
  
 0.727
AGA88592.1
Hypothetical protein.
  
  
 0.721
AGA85913.1
Putative periplasmic protein.
  
     0.656
AGA87139.1
Flp pilus assembly protein TadG.
  
     0.651
AGA88584.1
Hypothetical protein; Manually curated.
  
    0.597
AGA86932.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
  
     0.592
AGA87137.1
PFAM: TadE-like protein.
  
     0.591
AGA87549.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
 
  
 0.539
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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