Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA88603.1RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (413 aa)    
Predicted Functional Partners:
AGA88604.1
Hypothetical protein; PFAM: YCII-related domain.
 
    0.968
AGA85911.1
Hypothetical protein; PFAM: YCII-related domain.
 
    0.810
AGA88605.1
Ketosteroid isomerase-like enzyme; PFAM: Calcium/calmodulin dependent protein kinase II Association; TIGRFAM: conserved hypothetical protein.
 
     0.730
AGA85910.1
Hypothetical protein; PFAM: 3-demethylubiquinone-9 3-methyltransferase.
 
     0.711
AGA88018.1
PFAM: Bacterial protein of unknown function (DUF899).
 
    0.652
AGA86002.1
Hypothetical protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
     0.644
AGA87088.1
Hypothetical protein; PFAM: 3-demethylubiquinone-9 3-methyltransferase.
 
     0.479
AGA87250.1
Hypothetical protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
 
     0.464
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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