STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA88728.1Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (358 aa)    
Predicted Functional Partners:
AGA88729.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; ABC-2 type transporter.
 
  
 0.993
AGA88730.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
  
 0.981
AGA87842.1
DnaK suppressor protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger.
  
    0.814
AGA86833.1
PFAM: Universal stress protein family.
  
  
 0.724
AGA88477.1
TIGR00153 family protein; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein.
   
  
 0.690
AGA85083.1
PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
  
 
 0.668
AGA87980.1
PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
  
  
 0.653
AGA84922.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.651
AGA85325.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 
 0.608
AGA86675.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 
 0.607
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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