Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA88758.1PFAM: Bacterial regulatory proteins, tetR family. (216 aa)    
Predicted Functional Partners:
aguA
Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
     
 0.804
AGA88759.1
N-carbamoylputrescine amidase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase.
     
 0.775
AGA85620.1
Hypothetical protein.
  
     0.767
AGA85618.1
Hypothetical protein.
  
     0.765
AGA85102.1
HDOD domain-containing protein; PFAM: HDOD domain.
  
     0.760
AGA85619.1
Uncharacterized protein involved in chromosome partitioning.
  
     0.760
AGA85095.1
Putative membrane protein affecting hemolysin expression; PFAM: HAMP domain; Bacterial virulence factor haemolysin.
  
     0.731
AGA85237.1
PFAM: Uncharacterised protein family (UPF0259).
  
     0.695
AGA85710.1
PFAM: Protein of unknown function, DUF481.
  
     0.655
AGA85999.1
PFAM: Curli assembly protein CsgE.
  
     0.654
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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