Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGA88773.1PFAM: Glycosyl transferase family 2. (466 aa)    
Predicted Functional Partners:
AGA88771.1
Hypothetical protein.
 
   
 0.848
AGA88772.1
PFAM: HEAT repeat.
       0.808
AGA85675.1
Flp pilus assembly protein TadD; PFAM: Coatomer epsilon subunit.
  
 
 0.803
AGA88769.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; PAS fold; TIGRFAM: PAS domain S-box.
 
  
 0.793
AGA86883.1
Uncharacterized protein, putative amidase; PFAM: Creatinine amidohydrolase.
  
  
 0.770
AGA86483.1
PFAM: Tetratricopeptide repeat.
  
 
 0.724
AGA86508.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: Peptidase C39 family; manually curated.
  
 
 0.724
AGA88768.1
PFAM: GGDEF domain; Response regulator receiver domain; Hpt domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
  
 0.646
AGA88770.1
PFAM: Response regulator receiver domain.
  
    0.628
AGA88764.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
 
  
 0.613
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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