STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_0024Hypothetical protein; KEGG: dba:Dbac_3056 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit. (183 aa)    
Predicted Functional Partners:
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.773
Tmar_0021
Phage-type endonuclease; COGs: COG5377 Phage-related protein predicted endonuclease; InterPro IPR019080: IPR017482; KEGG: tit:Thit_1407 phage-type endonuclease; PFAM: YqaJ viral recombinase family; SPTR: Phage-type endonuclease; TIGRFAM: phage-type endonuclease; PFAM: YqaJ-like viral recombinase domain; TIGRFAM: putative phage-type endonuclease.
       0.651
Tmar_0022
RecT protein; COGs: COG3723 Recombinational DNA repair protein (RecE pathway); InterPro IPR018330: IPR004590; KEGG: gyc:GYMC61_0604 recombination and repair protein RecT; PFAM: DNA single-strand annealing protein RecT-like; SPTR: RecT protein; TIGRFAM: RecT protein; PFAM: RecT family; TIGRFAM: recombinase, phage RecT family.
       0.651
Tmar_0018
Hypothetical protein; KEGG: ank:AnaeK_0671 peptidase A24A domain protein; SPTR: Peptidase A24A domain protein.
       0.555
Tmar_0019
KEGG: hla:Hlac_3126 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.555
Tmar_0020
Hypothetical protein; KEGG: sen:SACE_6557 chitinase II; SPTR: Putative transcriptional regulator (HTH-type).
       0.555
Tmar_0016
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: tmt:Tmath_0051 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.531
Tmar_0017
Hypothetical protein; KEGG: ami:Amir_3283 carbamoyltransferase; SPTR: Carbamoyltransferase.
       0.531
Tmar_0025
KEGG: ure:UREG_04994 DNA polymerase gamma; SPTR: DNA polymerase gamma.
       0.406
Tmar_0026
Hypothetical protein; KEGG: adg:Adeg_1839 transposase; SPTR: Transposase.
       0.406
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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