STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_0034Sigma-70 region 4 type 2; InterPro IPR013249; KEGG: gtn:GTNG_2832 positive control sigma-like factor; PFAM: Sigma-70 region 4 type 2; SPTR: Prophage LambdaBa01, positive control factor Xpf; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (202 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.809
Tmar_0415
KEGG: hoh:Hoch_3106 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.777
Tmar_0035
KEGG: tcr:509269.4 Tb-291 membrane-associated protein-like; SPTR: Tb-291 membrane-associated protein-like, putative; PFAM: Bacterial regulatory proteins, tetR family.
       0.773
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.759
Tmar_0036
COGs: COG5323 conserved hypothetical protein; KEGG: xau:Xaut_3704 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Terminase-like family; TIGRFAM: phage uncharacterized protein (putative large terminase), C-terminal domain.
       0.727
Tmar_0037
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006944: IPR006528: IPR006427; KEGG: pla:Plav_0903 HK97 family phage portal protein; PFAM: portal protein; head morphogenesis protein SPP1 gp7; SPTR: Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage portal protein; Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; phage portal protein, HK97 family; phage portal protein, PBSX family.
       0.676
Tmar_2100
MCP methyltransferase, CheR-type; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: sth:STH1542 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: Chemotaxis protein methyltransferase; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.663
Tmar_0038
Phage prohead protease, HK97 family; InterPro IPR006433; KEGG: sro:Sros_3378 hypothetical protein; PFAM: peptidase U35 phage prohead HK97; SPTR: Mu-like prophage I protein-like protein; TIGRFAM: phage prohead protease, HK97 family; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
       0.649
Tmar_0039
COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: lga:LGAS_1485 phage phi-C31 GP36 major capsid-like protein; SPTR: Phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
       0.649
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.569
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.