STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
selDSelenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. (349 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.985
Tmar_0114
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 0.915
Tmar_0111
COGs: COG0492 Thioredoxin reductase; InterPro IPR013027: IPR005982: IPR008255: IPR000103; KEGG: ttr:Tter_1226 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase.
     
 0.910
Tmar_0789
COGs: COG0492 Thioredoxin reductase; InterPro IPR001327: IPR013027; KEGG: gwc:GWCH70_2182 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
     
 0.910
Tmar_1229
Aminotransferase class V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR020578: IPR016454: IPR000192; KEGG: tro:trd_1634 cysteine desulfurase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS.
    
 0.907
Tmar_1251
COGs: COG3276 Selenocysteine-specific translation elongation factor; InterPro IPR000795: IPR004161: IPR015190: IPR015191: IPR 004535; KEGG: adg:Adeg_0673 selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; SPTR: Selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor S [...]
 
   
 0.886
Tmar_1278
Aminotransferase class V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR020578: IPR016454: IPR000192; KEGG: mta:Moth_0199 aminotransferase, class V; PFAM: aminotransferase class V; SPTR: Aminotransferase, class V; PFAM: Aminotransferase class-V.
    
 0.822
Tmar_0796
Hypothetical protein; KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA; SPTR: GH10507.
       0.768
Tmar_1551
Pyridoxal phosphate-dependent enzyme; COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; InterPro IPR006337: IPR001597; KEGG: bbe:BBR47_31640 SelA-related pyridoxal phosphate-dependent enzyme; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; SPTR: SelA-related pyridoxal phosphate-dependent enzyme; TIGRFAM: pyridoxal phosphate-dependent enzyme; PFAM: L-seryl-tRNA selenium transferase; TIGRFAM: uncharacterized pyridoxal phosphate-dependent enzyme.
 
   
 0.530
Tmar_0794
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: sen:SACE_4184 acetyltransferase (GNAT) family protein; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.479
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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