STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_0877InterPro IPR007903: IPR014238; KEGG: nth:Nther_1312 sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; SPTR: Sporulation protein, YlmC/YmxH family; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain; TIGRFAM: sporulation protein, YlmC/YmxH family. (98 aa)    
Predicted Functional Partners:
Tmar_0876
InterPro IPR014202; KEGG: bts:Btus_3254 stage II sporulation protein R; PFAM: Sporulation stage II protein R; SPTR: Stage II sporulation protein R; PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
 
     0.892
Tmar_0875
RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.852
Tmar_1138
SpoVA protein; InterPro IPR005562; KEGG: slp:Slip_0528 stage V sporulation protein AC; PFAM: SpoVA protein; SPTR: Stage V sporulation protein AC; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
  
    0.821
Tmar_0874
RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.805
Tmar_1106
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.782
Tmar_1038
COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907; KEGG: sth:STH1558 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; SPTR: ATP-dependent clp protease proteolytic subunit; PFAM: Clp protease.
 
     0.773
Tmar_0132
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: sth:STH3200 stage II sporulation protein E; PFAM: Stage II sporulation protein E; PRIAM: Phosphoprotein phosphatase; SMART: protein phosphatase 2C domain protein; SPTR: Stage II sporulation protein E; PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E.
  
     0.772
Tmar_0350
InterPro IPR010897; KEGG: sth:STH481 stage II sporulation protein P; PFAM: Stage II sporulation P family protein; SPTR: Stage II sporulation protein P; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation protein P (SpoIIP); TIGRFAM: stage II sporulation protein P.
  
     0.772
Tmar_1137
InterPro IPR010894; KEGG: pth:PTH_1229 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; SPTR: Putative uncharacterized protein; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
  
    0.772
Tmar_1184
AAA ATPase; COGs: COG3854 conserved hypothetical protein; InterPro IPR003593: IPR000209; KEGG: mta:Moth_1536 hypothetical protein; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AA.
  
    0.771
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.