STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_1296Spore germination protein; InterPro IPR004761; KEGG: amt:Amet_4598 spore germination protein; PFAM: Spore germination protein; SPTR: Spore germination protein; PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease). (438 aa)    
Predicted Functional Partners:
Tmar_1297
InterPro IPR008844; KEGG: bts:Btus_0811 germination protein, Ger(X)C family; SPTR: Germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.947
Tmar_0067
InterPro IPR008844; KEGG: gwc:GWCH70_2165 germination protein, Ger(X)C family; PFAM: spore germination B3 GerAC family protein; SPTR: Germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.822
Tmar_1295
InterPro IPR004995; KEGG: tpd:Teth39_0180 GerA spore germination protein; PFAM: GerA spore germination protein; SPTR: GerA spore germination protein; PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.821
Tmar_1829
InterPro IPR008844; KEGG: adg:Adeg_0298 germination protein, Ger(X)C family; PFAM: spore germination B3 GerAC family protein; SPTR: Spore germination B3 GerAC like; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.778
Tmar_0075
KEGG: aoe:Clos_2803 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2508).
  
     0.744
Tmar_1830
Spore germination protein; InterPro IPR004761; KEGG: slp:Slip_1063 spore germination protein; PFAM: Spore germination protein; SPTR: Spore germination protein; PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
  
     0.744
Tmar_0207
Serine protease; InterPro IPR001478; KEGG: pth:PTH_2743 serine protease; SPTR: Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain.
  
     0.733
Tmar_1180
Stage III sporulation protein AE; InterPro IPR014194; KEGG: dau:Daud_1011 hypothetical protein; PFAM: Sporulation stage III protein AE; SPTR: Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.725
Tmar_0822
Sporulation protein YtxC; InterPro IPR014199: IPR017975; KEGG: tjr:TherJR_1880 sporulation protein YtxC; PFAM: Sporulation protein YtxC; SPTR: Sporulation protein YtxC; PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC.
  
    0.719
Tmar_1147
Protein of unknown function DUF95 transmembrane; InterPro IPR002798; KEGG: dau:Daud_1284 required for dissolution of the septal cell wall; RBL05740; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Required for dissolution of the septal cell wall; RBL05740; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
     0.708
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.