STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_1303NADH:flavin oxidoreductase/NADH oxidase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sth:STH540 putative xenobiotic reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: Putative xenobiotic reductase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family. (347 aa)    
Predicted Functional Partners:
Tmar_0476
COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR012255: IPR014730; KEGG: svi:Svir_28260 electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Protein fixA; electron transfer flavoprotein beta-subunit (Beta-ETF); PFAM: Electron transfer flavoprotein domain.
  
 
 0.841
Tmar_1120
COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR000049: IPR014730; KEGG: bts:Btus_1462 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein domain.
  
 
 0.841
Tmar_1351
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
      0.561
Tmar_2319
COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: pth:PTH_0287 transcriptional regulator; PFAM: transcription factor CarD; SPTR: Transcriptional regulator; PFAM: CarD-like/TRCF domain.
   
    0.533
Tmar_0477
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR001308: IPR014730: IPR014731; KEGG: bts:Btus_0429 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
   
 
 0.516
Tmar_1119
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730: IPR014731; KEGG: mta:Moth_0059 electron transfer flavoprotein alpha and beta-subunits; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha and beta-subunits; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
   
 
 0.516
Tmar_1304
Peptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: ttj:TTHA1068 proline dipeptidase; PFAM: peptidase M24; SPTR: Proline dipeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
  
    0.514
Tmar_0897
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR013217: IPR006108: IPR001753; KEGG: sth:STH3012 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Methyltransferase type 12; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
  
 0.502
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.481
Tmar_1111
RNA binding S1 domain protein; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029: IPR000110; KEGG: mta:Moth_1329 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; PFAM: RNA binding S1 domain protein; SPTR: Hydroxymethylbutenyl pyrophosphate reductase; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
   
    0.457
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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