STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_1349COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150: IPR013200; KEGG: sth:STH1514 haloacid dehalogenase-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: Haloacid dehalogenase-like hydrolase; TIGRFAM: Cof-like hydrolase; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. (369 aa)    
Predicted Functional Partners:
Tmar_1348
InterPro IPR018540; KEGG: aac:Aaci_3076 diguanylate phosphodiesterase; PFAM: Sporulation stage 0, Spo0E-like regulatory phosphatase; SPTR: Diguanylate phosphodiesterase; PFAM: Spo0E like sporulation regulatory protein.
       0.773
Tmar_1350
COGs: COG1001 Adenine deaminase; InterPro IPR006680; KEGG: rxy:Rxyl_1744 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase.
       0.773
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.