STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_1585Ferredoxin; KEGG: bpf:BpOF4_20389 ferredoxin; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF326). (114 aa)    
Predicted Functional Partners:
Tmar_1586
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR005467: IPR003660: IPR003661: IPR 003594; KEGG: gka:GK1689 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SPTR: Two-component sensor histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
     0.519
Tmar_1588
COGs: COG2132 Putative multicopper oxidase; InterPro IPR002355: IPR011707: IPR001117: IPR011706; KEGG: gwc:GWCH70_1696 multicopper oxidase type 3; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; SPTR: Multicopper oxidase type 3; PFAM: Multicopper oxidase.
 
   
 0.459
Tmar_1587
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR005829: IPR001867; KEGG: mta:Moth_0827 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.451
Tmar_1660
Protein of unknown function DUF421; COGs: COG2323 membrane protein; InterPro IPR007353: IPR012452; KEGG: gym:GYMC10_5046 protein of unknown function DUF421; PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF421); Protein of unknown function (DUF1657).
 
     0.432
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.