STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmar_1657COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: mta:Moth_2055 peptidoglycan-binding LysM; PFAM: beta-lactamase; SPTR: Peptidoglycan-binding LysM. (426 aa)    
Predicted Functional Partners:
Tmar_1658
KEGG: cce:Ccel_1121 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.613
Tmar_1659
KEGG: ade:Adeh_3039 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.612
Tmar_1656
OsmC family protein; COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR001579: IPR003718; KEGG: gwc:GWCH70_1348 OsmC family protein; PFAM: OsmC family protein; SPTR: OsmC family protein; PFAM: OsmC-like protein.
       0.481
mtaD
Amidohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
  
    0.468
Your Current Organism:
Thermaerobacter marianensis
NCBI taxonomy Id: 644966
Other names: T. marianensis DSM 12885, Thermaerobacter marianensis 7p75a, Thermaerobacter marianensis ATCC 700841, Thermaerobacter marianensis DSM 12885, Thermaerobacter marianensis str. DSM 12885, Thermaerobacter marianensis strain DSM 12885
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