STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
whiB4Putative transcriptional regulator, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (123 aa)    
Predicted Functional Partners:
ACR17920.1
Conserved hypothetical protein.
  
     0.738
secG
Protein-export membrane protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.716
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.696
putP
Sodium:proline symporter family protein; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
    0.696
ACR17626.1
Transcriptional regulator, MerR family.
  
     0.677
ACR18718.1
Putative penicillin-binding protein 1.
 
   
 0.667
ACR18715.1
Conserved hypothetical protein.
       0.663
ACR18716.1
Hypothetical protein.
       0.663
ACR18619.1
Putative phosphoglycerate mutase.
  
     0.652
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.649
Your Current Organism:
Corynebacterium kroppenstedtii
NCBI taxonomy Id: 645127
Other names: C. kroppenstedtii DSM 44385, Corynebacterium kroppenstedtii CCUG 35717, Corynebacterium kroppenstedtii CIP 105744, Corynebacterium kroppenstedtii DSM 44385, Corynebacterium kroppenstedtii str. DSM 44385, Corynebacterium kroppenstedtii strain DSM 44385
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