STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLRG_04507Pre-mRNA-processing factor 39. (590 aa)    
Predicted Functional Partners:
GLRG_05884
U2 small nuclear ribonucleoprotein A.
    
 
 0.991
GLRG_06447
LSM domain-containing protein.
    
 
 0.980
GLRG_00177
Nuclear cap-binding protein subunit 2.
    
 
 0.970
GLRG_07419
Uncharacterized protein.
   
 0.970
GLRG_04307
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.969
GLRG_04390
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.954
GLRG_00061
RNA recognition domain-containing protein.
    
 
 0.953
GLRG_08999
RNA recognition domain-containing protein.
   
 
 0.949
GLRG_11355
PWI domain-containing protein.
   
 
 0.949
GLRG_10332
LSM domain-containing protein.
   
 0.944
Your Current Organism:
Colletotrichum graminicola
NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.