STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLRG_05769Exonuclease. (324 aa)    
Predicted Functional Partners:
GLRG_07849
WD domain-containing protein.
   
  0.905
PAN3
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]
    
 0.901
GLRG_11662
Brix domain-containing protein.
   
   0.867
GLRG_06301
RNA helicase.
   
  0.848
GLRG_04059
RNA recognition domain-containing protein.
   
  0.815
GLRG_00213
60S ribosomal protein L7.
   
 0.813
GLRG_09409
tRNA methyltransferase complex GCD14 subunit.
   
   0.811
GLRG_02545
Pre-rRNA-processing protein IPI1.
   
 
  0.799
GLRG_10189
Brix domain-containing protein.
   
   0.795
GLRG_03997
Uncharacterized protein.
   
   0.788
Your Current Organism:
Colletotrichum graminicola
NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.