STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLRG_07284Uncharacterized protein. (469 aa)    
Predicted Functional Partners:
GLRG_05094
LisH protein.
   
 0.883
GLRG_05323
Uncharacterized protein.
    
 0.874
GLRG_01225
WD domain-containing protein.
   
 0.866
GLRG_02036
Transcription initiation factor TFIID subunit A.
    
 0.842
GLRG_00616
Transcription initiation factor IID.
    
 0.838
GLRG_00632
Histone acetyltransferase subunit 3.
    
 0.838
GLRG_06265
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.835
GLRG_10731
TATA box binding protein associated factor.
    
 0.831
GLRG_05007
FAT domain-containing protein; Belongs to the PI3/PI4-kinase family.
   
 0.823
GLRG_02875
Transcription initiation factor IID.
    
 0.822
Your Current Organism:
Colletotrichum graminicola
NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.