STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLRG_08452ATP-dependent protease La domain-containing protein. (551 aa)    
Predicted Functional Partners:
GLRG_10962
Ubiquitin family protein.
    
  0.824
GLRG_11293
UbiD family decarboxylase.
    
 0.782
GLRG_02608
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.780
GLRG_06569
Ubiquitin-conjugating enzyme.
     
 0.743
GLRG_02751
Cullin family protein; Belongs to the cullin family.
    
 0.728
GLRG_06463
Cullin family protein; Belongs to the cullin family.
    
 0.728
GLRG_05559
Ubiquitin family protein.
   
  0.718
GLRG_08754
BZIP domain-containing protein.
   
  0.718
GLRG_08755
Complex I intermediate-associated protein 30.
   
  0.718
GLRG_05157
Ubiquitin-like domain-containing protein.
    
  0.713
Your Current Organism:
Colletotrichum graminicola
NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.