GLRG_08954 protein (Colletotrichum graminicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLRG_08954

Sec7 domain-containing protein. (1866 aa)

Predicted Functional Partners:

GLRG_00025

0.938

GLRG_08281

0.904

GLRG_01947

0.745

GLRG_01625

0.739

GLRG_03247

0.739

GLRG_03844

0.739

GLRG_06610

0.686

GLRG_02189

0.643

GLRG_02256

0.643

GLRG_08076

0.619

Your Current Organism:

Colletotrichum graminicola

NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLRG_00025	GLRG_01947	E3Q2Q2	E3Q8T8	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Sec7 domain-containing protein.	0.797
GLRG_00025	GLRG_08281	E3Q2Q2	E3QQJ9	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Sec7 domain-containing protein.	0.808
GLRG_00025	GLRG_08954	E3Q2Q2	E3QSI3	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Sec7 domain-containing protein.	0.938
GLRG_01625	GLRG_01947	E3Q6N3	E3Q8T8	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Sec7 domain-containing protein.	0.712
GLRG_01625	GLRG_06610	E3Q6N3	E3QKS8	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.947
GLRG_01625	GLRG_08076	E3Q6N3	E3QPZ4	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Ras family protein.	0.778
GLRG_01625	GLRG_08281	E3Q6N3	E3QQJ9	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Sec7 domain-containing protein.	0.928
GLRG_01625	GLRG_08954	E3Q6N3	E3QSI3	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Sec7 domain-containing protein.	0.739
GLRG_01947	GLRG_00025	E3Q8T8	E3Q2Q2	Sec7 domain-containing protein.	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.797
GLRG_01947	GLRG_01625	E3Q8T8	E3Q6N3	Sec7 domain-containing protein.	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.712
GLRG_01947	GLRG_03247	E3Q8T8	E3QB65	Sec7 domain-containing protein.	Uncharacterized protein.	0.712
GLRG_01947	GLRG_03844	E3Q8T8	E3QDJ5	Sec7 domain-containing protein.	ADP-ribosylation factor.	0.712
GLRG_01947	GLRG_06610	E3Q8T8	E3QKS8	Sec7 domain-containing protein.	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.684
GLRG_01947	GLRG_08076	E3Q8T8	E3QPZ4	Sec7 domain-containing protein.	Ras family protein.	0.448
GLRG_01947	GLRG_08281	E3Q8T8	E3QQJ9	Sec7 domain-containing protein.	Sec7 domain-containing protein.	0.801
GLRG_01947	GLRG_08954	E3Q8T8	E3QSI3	Sec7 domain-containing protein.	Sec7 domain-containing protein.	0.745
GLRG_02189	GLRG_08954	E3Q806	E3QSI3	1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	Sec7 domain-containing protein.	0.643
GLRG_02256	GLRG_08954	E3Q873	E3QSI3	Uncharacterized protein.	Sec7 domain-containing protein.	0.643
GLRG_03247	GLRG_01947	E3QB65	E3Q8T8	Uncharacterized protein.	Sec7 domain-containing protein.	0.712
GLRG_03247	GLRG_06610	E3QB65	E3QKS8	Uncharacterized protein.	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.686