SPPG_08943 protein (Spizellomyces punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPPG_08943

Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (258 aa)

Predicted Functional Partners:

SPPG_00860

0.988

SPPG_05871

0.985

SPPG_07952

0.971

SPPG_01173

0.966

SPPG_00608

0.966

SPPG_05531

0.964

SPPG_02010

0.960

SPPG_05054

0.942

SPPG_01093

0.942

SPPG_03371

0.932

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_00608	SPPG_00860	A0A0L0HUZ8	A0A0L0HWB1	Uncharacterized protein.	Uncharacterized protein.	0.505
SPPG_00608	SPPG_01173	A0A0L0HUZ8	A0A0L0HQP7	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.971
SPPG_00608	SPPG_02010	A0A0L0HUZ8	A0A0L0HPN7	Uncharacterized protein.	Uncharacterized protein.	0.834
SPPG_00608	SPPG_03371	A0A0L0HUZ8	A0A0L0HJF1	Uncharacterized protein.	Uncharacterized protein.	0.959
SPPG_00608	SPPG_05871	A0A0L0HUZ8	A0A0L0HCJ1	Uncharacterized protein.	Uncharacterized protein.	0.580
SPPG_00608	SPPG_07952	A0A0L0HUZ8	A0A0L0H704	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_00608	SPPG_08943	A0A0L0HUZ8	A0A0L0HT84	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.966
SPPG_00860	SPPG_00608	A0A0L0HWB1	A0A0L0HUZ8	Uncharacterized protein.	Uncharacterized protein.	0.505
SPPG_00860	SPPG_01173	A0A0L0HWB1	A0A0L0HQP7	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.847
SPPG_00860	SPPG_02010	A0A0L0HWB1	A0A0L0HPN7	Uncharacterized protein.	Uncharacterized protein.	0.896
SPPG_00860	SPPG_03371	A0A0L0HWB1	A0A0L0HJF1	Uncharacterized protein.	Uncharacterized protein.	0.909
SPPG_00860	SPPG_07952	A0A0L0HWB1	A0A0L0H704	Uncharacterized protein.	Uncharacterized protein.	0.582
SPPG_00860	SPPG_08943	A0A0L0HWB1	A0A0L0HT84	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.988
SPPG_01093	SPPG_01173	A0A0L0HRB4	A0A0L0HQP7	PRKCSH domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.947
SPPG_01093	SPPG_03371	A0A0L0HRB4	A0A0L0HJF1	PRKCSH domain-containing protein.	Uncharacterized protein.	0.898
SPPG_01093	SPPG_05531	A0A0L0HRB4	A0A0L0HE34	PRKCSH domain-containing protein.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.690
SPPG_01093	SPPG_05871	A0A0L0HRB4	A0A0L0HCJ1	PRKCSH domain-containing protein.	Uncharacterized protein.	0.938
SPPG_01093	SPPG_08943	A0A0L0HRB4	A0A0L0HT84	PRKCSH domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.942
SPPG_01173	SPPG_00608	A0A0L0HQP7	A0A0L0HUZ8	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.971
SPPG_01173	SPPG_00860	A0A0L0HQP7	A0A0L0HWB1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.847