STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG16765.1Cysteine desulfuration protein SufE. (138 aa)    
Predicted Functional Partners:
SDG60539.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.977
SDG16733.1
Putative protease.
       0.847
SDG60845.1
Fe-S cluster assembly protein SufB.
 
 
 0.703
SDG60763.1
Fe-S cluster assembly ATP-binding protein.
 
   0.701
SDG98325.1
NifU homolog involved in Fe-S cluster formation.
    
 0.634
SDG60748.1
Fe-S cluster assembly protein SufD.
 
 
 0.591
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.504
SDG16701.1
Predicted Zn-dependent peptidase.
       0.498
SDG86047.1
tRNA A37 threonylcarbamoyladenosine dehydratase.
   
 
 0.415
Your Current Organism:
Prevotella sp. BP1148
NCBI taxonomy Id: 645274
Other names: P. sp. BP1-148, Prevotella sp. BP1-148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.