Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG11741.1 | SDG11774.1 | SAMN04487901_10120 | SAMN04487901_10121 | DNA processing protein. | acyl-CoA thioester hydrolase. | 0.855 |
SDG11741.1 | SDG11807.1 | SAMN04487901_10120 | SAMN04487901_10122 | DNA processing protein. | Protein of unknown function. | 0.870 |
SDG11741.1 | SDG11863.1 | SAMN04487901_10120 | SAMN04487901_10123 | DNA processing protein. | Alpha-L-arabinofuranosidase. | 0.605 |
SDG11741.1 | SDG19680.1 | SAMN04487901_10120 | SAMN04487901_101240 | DNA processing protein. | Competence protein ComEC. | 0.870 |
SDG11741.1 | SDG29723.1 | SAMN04487901_10120 | SAMN04487901_102107 | DNA processing protein. | comF family protein. | 0.876 |
SDG11741.1 | SDG30001.1 | SAMN04487901_10120 | SAMN04487901_102115 | DNA processing protein. | Magnesium chelatase family protein. | 0.839 |
SDG11741.1 | SDG45601.1 | SAMN04487901_10120 | SAMN04487901_10491 | DNA processing protein. | Single-strand DNA-binding protein. | 0.592 |
SDG11741.1 | SDH37262.1 | SAMN04487901_10120 | SAMN04487901_12429 | DNA processing protein. | Predicted endonuclease; Belongs to the UPF0102 family. | 0.550 |
SDG11741.1 | recA | SAMN04487901_10120 | SAMN04487901_10596 | DNA processing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.584 |
SDG11741.1 | topA | SAMN04487901_10120 | SAMN04487901_11115 | DNA processing protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.658 |
SDG11774.1 | SDG11741.1 | SAMN04487901_10121 | SAMN04487901_10120 | acyl-CoA thioester hydrolase. | DNA processing protein. | 0.855 |
SDG11774.1 | SDG11807.1 | SAMN04487901_10121 | SAMN04487901_10122 | acyl-CoA thioester hydrolase. | Protein of unknown function. | 0.847 |
SDG11774.1 | SDG11863.1 | SAMN04487901_10121 | SAMN04487901_10123 | acyl-CoA thioester hydrolase. | Alpha-L-arabinofuranosidase. | 0.605 |
SDG11807.1 | SDG11741.1 | SAMN04487901_10122 | SAMN04487901_10120 | Protein of unknown function. | DNA processing protein. | 0.870 |
SDG11807.1 | SDG11774.1 | SAMN04487901_10122 | SAMN04487901_10121 | Protein of unknown function. | acyl-CoA thioester hydrolase. | 0.847 |
SDG11807.1 | SDG11863.1 | SAMN04487901_10122 | SAMN04487901_10123 | Protein of unknown function. | Alpha-L-arabinofuranosidase. | 0.605 |
SDG11863.1 | SDG11741.1 | SAMN04487901_10123 | SAMN04487901_10120 | Alpha-L-arabinofuranosidase. | DNA processing protein. | 0.605 |
SDG11863.1 | SDG11774.1 | SAMN04487901_10123 | SAMN04487901_10121 | Alpha-L-arabinofuranosidase. | acyl-CoA thioester hydrolase. | 0.605 |
SDG11863.1 | SDG11807.1 | SAMN04487901_10123 | SAMN04487901_10122 | Alpha-L-arabinofuranosidase. | Protein of unknown function. | 0.605 |
SDG19680.1 | SDG11741.1 | SAMN04487901_101240 | SAMN04487901_10120 | Competence protein ComEC. | DNA processing protein. | 0.870 |
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