STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG19393.1ABC-2 type transport system ATP-binding protein. (272 aa)    
Predicted Functional Partners:
SDG19460.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
  
 0.961
SDG19432.1
Hypothetical protein.
       0.810
SDG19356.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
 
0.805
SDG19496.1
Putative ABC transport system ATP-binding protein.
 
 
 
0.744
SDG38286.1
ABC-type sugar transport system, substrate-binding protein, contains N-terminal xre family HTH domain.
  
 
 0.736
SDG54501.1
PAS domain S-box-containing protein.
    
 0.667
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.614
SDG15660.1
ATP-binding cassette, subfamily B, MsbA.
   
 0.607
SDG72275.1
Hypothetical protein.
   
 0.607
atpA
F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.605
Your Current Organism:
Prevotella sp. BP1148
NCBI taxonomy Id: 645274
Other names: P. sp. BP1-148, Prevotella sp. BP1-148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.