Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG29630.1 | SDG29665.1 | SAMN04487901_102104 | SAMN04487901_102105 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | Release factor glutamine methyltransferase. | 0.705 |
SDG29630.1 | SDG29723.1 | SAMN04487901_102104 | SAMN04487901_102107 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | comF family protein. | 0.698 |
SDG29630.1 | SDG29839.1 | SAMN04487901_102104 | SAMN04487901_102109 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | Polyketide cyclase / dehydrase and lipid transport. | 0.556 |
SDG29630.1 | pyrE | SAMN04487901_102104 | SAMN04487901_102108 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.704 |
SDG29630.1 | recX | SAMN04487901_102104 | SAMN04487901_102106 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.732 |
SDG29665.1 | SDG29630.1 | SAMN04487901_102105 | SAMN04487901_102104 | Release factor glutamine methyltransferase. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | 0.705 |
SDG29665.1 | SDG29723.1 | SAMN04487901_102105 | SAMN04487901_102107 | Release factor glutamine methyltransferase. | comF family protein. | 0.844 |
SDG29665.1 | SDG29839.1 | SAMN04487901_102105 | SAMN04487901_102109 | Release factor glutamine methyltransferase. | Polyketide cyclase / dehydrase and lipid transport. | 0.680 |
SDG29665.1 | SDG47970.1 | SAMN04487901_102105 | SAMN04487901_104162 | Release factor glutamine methyltransferase. | Ribose 5-phosphate isomerase B. | 0.646 |
SDG29665.1 | atpA | SAMN04487901_102105 | SAMN04487901_11572 | Release factor glutamine methyltransferase. | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.651 |
SDG29665.1 | atpE | SAMN04487901_102105 | SAMN04487901_11569 | Release factor glutamine methyltransferase. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.673 |
SDG29665.1 | atpH | SAMN04487901_102105 | SAMN04487901_11571 | Release factor glutamine methyltransferase. | F-type H+-transporting ATPase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.659 |
SDG29665.1 | prfA | SAMN04487901_102105 | SAMN04487901_11226 | Release factor glutamine methyltransferase. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.975 |
SDG29665.1 | pyrE | SAMN04487901_102105 | SAMN04487901_102108 | Release factor glutamine methyltransferase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.685 |
SDG29665.1 | recX | SAMN04487901_102105 | SAMN04487901_102106 | Release factor glutamine methyltransferase. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.843 |
SDG29723.1 | SDG29630.1 | SAMN04487901_102107 | SAMN04487901_102104 | comF family protein. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase. | 0.698 |
SDG29723.1 | SDG29665.1 | SAMN04487901_102107 | SAMN04487901_102105 | comF family protein. | Release factor glutamine methyltransferase. | 0.844 |
SDG29723.1 | SDG29839.1 | SAMN04487901_102107 | SAMN04487901_102109 | comF family protein. | Polyketide cyclase / dehydrase and lipid transport. | 0.682 |
SDG29723.1 | pyrE | SAMN04487901_102107 | SAMN04487901_102108 | comF family protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.687 |
SDG29723.1 | recX | SAMN04487901_102107 | SAMN04487901_102106 | comF family protein. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.847 |
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