STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG29956.1TPR repeat-containing protein. (562 aa)    
Predicted Functional Partners:
SDG29981.1
Thiol-disulfide isomerase or thioredoxin.
       0.843
SDG30001.1
Magnesium chelatase family protein.
       0.822
SDG29839.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.777
SDG53744.1
Hypothetical protein.
  
     0.773
SDG18436.1
Protein of unknown function.
  
     0.772
SDH22704.1
Hypothetical protein.
  
     0.739
SDH03978.1
Tetratricopeptide repeat-containing protein.
  
   0.726
SDH03555.1
Protein of unknown function.
  
     0.694
SDH41121.1
Hypothetical protein.
  
     0.684
SDG27466.1
Protein of unknown function.
  
     0.678
Your Current Organism:
Prevotella sp. BP1148
NCBI taxonomy Id: 645274
Other names: P. sp. BP1-148, Prevotella sp. BP1-148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.