STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG56183.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (100 aa)    
Predicted Functional Partners:
SDG56215.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.994
SDH08308.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.976
SDG68167.1
Cache domain-containing protein.
 
 0.929
SDG78263.1
Methyl-accepting chemotaxis protein.
 
 0.924
SDG40363.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.875
SDG72391.1
Methyl-accepting chemotaxis protein.
  
 0.871
SDG93021.1
Signal transduction histidine kinase.
  
 
 0.870
SDG28374.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.823
SDG94657.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
  0.812
SDG40336.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
  0.808
Your Current Organism:
Prevotella sp. BP1148
NCBI taxonomy Id: 645274
Other names: P. sp. BP1-148, Prevotella sp. BP1-148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.