STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG67870.1Poly(3-hydroxybutyrate) depolymerase. (591 aa)    
Predicted Functional Partners:
SDG26669.1
Autotransporter-associated beta strand repeat-containing protein.
 
 
   0.758
SDG67898.1
Glycosyl hydrolase family 67 N-terminus.
       0.682
SDG67751.1
DUF1680 family protein.
 
     0.650
SDG67679.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
     0.563
SDH00785.1
Pectate lyase.
  
     0.536
SDG26620.1
Protein of unknown function.
  
 
   0.534
SDH05008.1
M6 family metalloprotease domain-containing protein.
  
     0.524
SDG30924.1
Hypothetical protein.
  
     0.518
SDG11564.1
Endo-1,4-beta-xylanase, GH35 family.
  
 
  
0.504
SDG26590.1
Enterochelin esterase.
  
 
   0.499
Your Current Organism:
Prevotella sp. BP1148
NCBI taxonomy Id: 645274
Other names: P. sp. BP1-148, Prevotella sp. BP1-148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.